Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVVLSVGSNLGDRLARLRSVADGLGD----ALIAASPIYEADPWGGVEQ-----GQFLNAVLIADDPTCEPREWLRRAQEFERAAGRVR-GQRWGPRNLDVDLIACYQTSATEALVEVTARENHLTLPHPLAHLRAFVLIPWIAVDPTAQLTVAGCPRPV-TRLLAELEPADRDSVRLFRPSFDLNSRHPVSRAPES
4PZV Chain:A ((1-166))
-MQYIIGIGTNIGFTIENIHLAITALESQQNIRIIRKASLYSSKAVLKEDAPKEWDIRFLNTAVKIS-SSLKPDELLVLLKDIELKIGRDLNAPAWSPRVIDLDILAA---------EDLILETDKLTIPHKELINRSFALAPLLELSKGWHHP--KYVEWDLNIRLKELG----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PZV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95354 for 1077 contacts (-88.5/contact) +
2D Compatibility (PS) -15777 + (NN) -5914 + (LL) 2252
1D Compatibility (HY) -8800 + (ID) 1600
Total energy: -125193.0 ( -116.24 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_4PZV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PZV-query.scw
PDB file :
Tito_Scwrl_4PZV.pdb
: