Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDF-----QENRFFWEEALHHGIRHGWSIPVRGKYGL-I-SM-LSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
1L3L Chain:A ((2-234))
-QHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGY-----AYLHIQHRHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISF-----LRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI-
General information:
TITO was launched using:
RESULT:
Template:
1L3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104582 for 1685 contacts (-62.1/contact) +
2D Compatibility (PS) -24469 + (NN) -11109 + (LL) 416
1D Compatibility (HY) -6000 + (ID) 2450
Total energy: -148194.0 ( -87.95 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_1L3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L3L-query.scw
PDB file :
Tito_Scwrl_1L3L.pdb
: