Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSRIFADNAQSIGNTPLVQINRIAPR---GVTILAKIEGRNPGYSVKCRIGANMIWDAEASGRLKSGMTLVEPTSGNTGIGLAFVAAARGYKLILTMPASMSLERRKVLKALGAELVLT-------EPAKGMKGAIQKAEELVAGDPGKYFMPQQFDNPANPAIHEKTTGPEIWNDTEGAVDVLVSGVGTGGTLTGVSRYIKNTRGKPILAVAVEPVTSPVISQTLAGEEVKPAPHKIQGIGAGFVPKNLDLSLVDRVEKIGDDEAKNMALRLMQEEGILCGISSGAAMAAAVRLAEEPNMQGKTIVVILPDSGERYLSSMLFD------GLFSEQELTQ |
4L0D Chain:B ((75-407)) | --KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEI----PNSHIL-DQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKE-KCPGCRIIGVDPEGS-ILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQ-EGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L0D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -104121 for 2872 contacts (-36.3/contact) +
2D Compatibility (PS) -34672 + (NN) -16274 + (LL) 248
1D Compatibility (HY) -24400 + (ID) 6750
Total energy: -185969.0 ( -64.75 by residue)
QMean score : 0.480
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