Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
3CF9 Chain:D ((14-159))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE-
General information:
TITO was launched using:
RESULT:
Template:
3CF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117571 for 1033 contacts (-113.8/contact) +
2D Compatibility (PS) -15062 + (NN) -5057 + (LL) 720
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -157320.0 ( -152.29 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3CF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF9-query.scw
PDB file :
Tito_Scwrl_3CF9.pdb
: