Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKVFSSQAYRHKVVLVSGGCSGIGRALALRFARAGARLAILDLDQAALDSLVQHLRDHLGGEALGLRCDVADADAVERAVALAVERFGGIDVLVNNAGITHRGTFAETGLGVFRKVMAVNFFGAVHCTRAALPSLLERRG-QIVVLGSLTGFAPLLYR-SAYNASKHALHGLFDTLRMELEGTGVSVTLACPGFTATDLRKNALVGDGSVTRQPVQVLGSQVASPVEVAEAIFQGAARRRRLLVLSNVNWRARLLARFFPRLFEKLLVPRLSGLKPQP
1VL8 Chain:B ((20-209))
-----------RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM-------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152959 for 1569 contacts (-97.5/contact) +
2D Compatibility (PS) -20674 + (NN) -12155 + (LL) 7028
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -192310.0 ( -122.57 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1VL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL8-query.scw
PDB file :
Tito_Scwrl_1VL8.pdb
: