Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
3Q9M Chain:B ((4-172))
--FHELEPGPEVPEVVYALIEIPKGSRN-KYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVE--DPYFNDWKDISDVPKAFLDEIAHFFQRYKELQ-GKTTKIEGWGNAEEAKREILRAIEMYKE
General information:
TITO was launched using:
RESULT:
Template:
3Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85957 for 1330 contacts (-64.6/contact) +
2D Compatibility (PS) -18616 + (NN) -12148 + (LL) 688
1D Compatibility (HY) -18400 + (ID) 3600
Total energy: -138033.0 ( -103.78 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9M-query.scw
PDB file :
Tito_Scwrl_3Q9M.pdb
: