Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIEN----QKLLLIYAP-HLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIKRHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
1KTG Chain:A ((4-136))
----------------KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQL--SHEHQNWKWCELEDAIKIADY-AEMGSLLRKFSAFLAGF----
General information:
TITO was launched using:
RESULT:
Template:
1KTG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70097 for 965 contacts (-72.6/contact) +
2D Compatibility (PS) -13235 + (NN) 2629 + (LL) 1608
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -81245.0 ( -84.19 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_1KTG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KTG-query.scw
PDB file :
Tito_Scwrl_1KTG.pdb
: