Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQDYISYIRSKVGHETIFLTYSGGILTD---GKGRVLLQLRAD---KNSWGIIGGCMEL--GESSVDTLKREFFEETGLRVEPIRLLNVYTNFQDSYPNGDKAQTVGFIYEVSCPKPVNIEGFHNEETLQLDYFSKEDVKNITIVNEQHQLILDEYFSQTFQMGR
3GZ5 Chain:A ((21-157))
------------------QLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRD----ARGWSVTVCYTALMSYQ-ACQI-QIASVSDVKWWPLADVLQMP-LAFDHLQLIEQARERLTQKAL
General information:
TITO was launched using:
RESULT:
Template:
3GZ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44921 for 967 contacts (-46.5/contact) +
2D Compatibility (PS) -13484 + (NN) -1239 + (LL) 1668
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -64376.0 ( -66.57 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_3GZ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZ5-query.scw
PDB file :
Tito_Scwrl_3GZ5.pdb
: