Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTIPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGEDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPG-PLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIGTFAGTDRPDGYRAILESHWRN |
3N8H Chain:A ((3-262)) | ---------AMIIADNIKQFHSIRNSLIK-QQKIGFVPTMGALHNGHISLIKKAKSE-NDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASLDVDVLFNPSEKDIYPDGNLLRIEPKLEIANILEGKSRPGHFSGMLTVVLKLLQITKPNNLYLGEKDYQQVMLIKQLVKDFFINTKIIVCPTQRQPSGLPLSSRNKNLTSTDIEIANKIYEILRQD--DFSN-----LEELTNKINST-GAKLQYIQKLN-----------NRIFLAFYIGKVRLIDNFLKETGP-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169790 for 2071 contacts (-82.0/contact) +
2D Compatibility (PS) -28480 + (NN) -14567 + (LL) 1336
1D Compatibility (HY) -23200 + (ID) 4800
Total energy: -239501.0 ( -115.65 by residue)
QMean score : 0.612
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