Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFITFEGIDGSGKTIQSELLANYFKQI----HGENNMVLTREPGGTDFAEKVRGILLKDSIDPVSELLLLISMRYEHVKKVILPALKKGKIVICDRFIDSTIAYQGYGLGVDLELIRDLHKLVKI-KYPDTTFILDIDVQIGLSRAMDKNK-YEEMNISFYNKVRKGFQEIAINEPDRCSIITEIEAKDNNQVHVEIVNKVTATKPVLLRK
3V9P Chain:A ((26-226))
KFITFEGID---KTTHLQWFCDRLQERLGPAG--RHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP-ESESDAFFARTRAEYLRRAQEAPHRFVIVDS--SEPIAQIRKQLEGVLAAL-------
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82711 for 1386 contacts (-59.7/contact) +
2D Compatibility (PS) -20543 + (NN) -12721 + (LL) 580
1D Compatibility (HY) -8800 + (ID) 3300
Total energy: -127495.0 ( -91.99 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: