Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLP-GNIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKS---RLPIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKKHV----------IYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
1TPW Chain:B ((5-235))
--FFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWL-KTHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINAKH----
General information:
TITO was launched using:
RESULT:
Template:
1TPW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120404 for 1720 contacts (-70.0/contact) +
2D Compatibility (PS) -23230 + (NN) -8841 + (LL) 232
1D Compatibility (HY) -14000 + (ID) 4200
Total energy: -170443.0 ( -99.09 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1TPW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TPW-query.scw
PDB file :
Tito_Scwrl_1TPW.pdb
: