Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELKNVYRTFKNGDKNIRVLKDINIHINAGEFIAIMGPSGSGKSTLINILGFIDREYHGEYLFEGSNYQTQSDNQLANIRNKTVGFVFQNFKLIHNNTILENISMPLVYTNMNTIERKNKVMTVLSAVGLDGKGDFTP--------------SKLSGGQQQRVAIARAIINNPKFIIADEPTGALDSDTSKIIMDIFTSLNRDNHTTIILVTHDRKVAEKADRIIHILDGRI----QHEEVIK
2FGK Chain:A ((24-231))
-------------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL----RRQVGVVLQDNVLL-NRSIIDNIS--LANPGMS-------VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGR--TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-
General information:
TITO was launched using:
RESULT:
Template:
2FGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98749 for 1411 contacts (-70.0/contact) +
2D Compatibility (PS) -19918 + (NN) -1954 + (LL) 2416
1D Compatibility (HY) -18800 + (ID) 3850
Total energy: -140855.0 ( -99.83 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_2FGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FGK-query.scw
PDB file :
Tito_Scwrl_2FGK.pdb
: