Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNR--------DEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDT----TPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
1EYE Chain:A ((5-274))
--PVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGG--------------ETSRVIPVVKELAAQGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAE-------
General information:
TITO was launched using:
RESULT:
Template:
1EYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129197 for 2130 contacts (-60.7/contact) +
2D Compatibility (PS) -26978 + (NN) -19623 + (LL) 1524
1D Compatibility (HY) -16000 + (ID) 4700
Total energy: -194974.0 ( -91.54 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_1EYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EYE-query.scw
PDB file :
Tito_Scwrl_1EYE.pdb
: