Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKGKFLKVSSLFVATLTTATLVSSPAANALSSKAMDNHPQQTQSSKQQTPKIKKGGNLKPLEQREHANVILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAI----NQDNYPNGGFTAEQITK--YSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVP-----NEFNGAVFINENVRNFLKQNIEDIHFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNPDAA |
| 1AGJ Chain:A ((1-242)) | ----------------------------EVSAEEIKKHEEKWNKYYGVNAFNLPKELFSKVDEK----------------DRQKYPYNTIGNVFVK---GQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHRSEIELTT-LSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRIINEKNE--------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AGJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34036 for 1933 contacts (-17.6/contact) +
2D Compatibility (PS) -24795 + (NN) -11288 + (LL) -864
1D Compatibility (HY) -11600 + (ID) 2900
Total energy: -85483.0 ( -44.22 by residue)
QMean score : 0.392
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