Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNLPMNKLIDEVNNELSVAINK-SVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGVKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRL--TDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEG-QPIDLETLEMIHKTKTGALLTFAVMSAADI-ANVDDATKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH |
| 3LOM Chain:A ((13-302)) | -----IDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAP---------------KTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS--KAAALIELTKQLQNRS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86117 for 2131 contacts (-40.4/contact) +
2D Compatibility (PS) -29317 + (NN) -18035 + (LL) 992
1D Compatibility (HY) -15600 + (ID) 4800
Total energy: -152877.0 ( -71.74 by residue)
QMean score : 0.556
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