Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVE--NASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
1JTK Chain:A ((1-131))
-MNRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENA--AYSMCNCAERTALFKAVSEGDT--EFQMLAVAADTPGPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDLH
General information:
TITO was launched using:
RESULT:
Template:
1JTK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42625 for 1024 contacts (-41.6/contact) +
2D Compatibility (PS) -14367 + (NN) -7985 + (LL) -40
1D Compatibility (HY) -10000 + (ID) 3000
Total energy: -78017.0 ( -76.19 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1JTK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JTK-query.scw
PDB file :
Tito_Scwrl_1JTK.pdb
: