Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKA----HSWGAAKQLDTASHFVLIFARKNVTSRSPYVQHMLRDIKKYEAQTIPAVEQKFDAFQADFH-ISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDP----PKNKTRQAYEDVIEWVGPKE
1VFR Chain:A ((2-218))
----THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKACSHVILFANK--LSYTRDDYDVVLSKAVADKRITEEQKEAAFASF-KFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGI--D--PELLSEIFADELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL----
General information:
TITO was launched using:
RESULT:
Template:
1VFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65186 for 1442 contacts (-45.2/contact) +
2D Compatibility (PS) -22194 + (NN) -6273 + (LL) 660
1D Compatibility (HY) -12400 + (ID) 3150
Total energy: -108543.0 ( -75.27 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_1VFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFR-query.scw
PDB file :
Tito_Scwrl_1VFR.pdb
: