Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAQNLPTIALLATGGTIAGSGVDAS-LGSYKSGELGVKELLKAIPSLNKIARIQGEQVSNIGSQDMNEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLHSTKPVVLVGAMRNASSLSADGALNLYYAVSVAVNEKSANKGVLVVMDDTIFRVREVVKTHTTHISTFKALNSGAIGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKVDIIYTHAGMT-PDLFQASLNSHAKGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVGSGGVT-SGEIDDKAYGFITSDNLNPQKARVLLQLALTKTNDKAKIQEMFEEY |
3NXK Chain:A ((8-334)) | ----KSRIAILGTGGTIAGFIDSTIATTGYAAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLF-AEGIDGVVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVVNKEAKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVIKAHTKNAPFDVSKLT-SLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKDVLKELLKKGLKVVVSSRVVAGCVAVSD--SDEKLGFISAEDLNPQKARVLLMLALTKTSDPKKIQEYFLKY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NXK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213402 for 2878 contacts (-74.1/contact) +
2D Compatibility (PS) -35988 + (NN) -21496 + (LL) 676
1D Compatibility (HY) -28800 + (ID) 7350
Total energy: -306360.0 ( -106.45 by residue)
QMean score : 0.578
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