Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSD-KDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
1SMC Chain:A ((25-152))
--LAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE----------------
General information:
TITO was launched using:
RESULT:
Template:
1SMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73719 for 849 contacts (-86.8/contact) +
2D Compatibility (PS) -13151 + (NN) -66 + (LL) 36
1D Compatibility (HY) -8800 + (ID) 2500
Total energy: -98200.0 ( -115.67 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1SMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SMC-query.scw
PDB file :
Tito_Scwrl_1SMC.pdb
: