Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLVILSGAGISAESGIKTFRDAGGLWEGHDIMEVASPYGWKKNPQKVLDFYNQRRRQLF--EVYPNKAHKALAELEKH-Y-QVNIITQNVDDLHERAGSSRILHLHGELLSVRSEKDPNLVYRWEKDLNLGDLAQDKAQLRPDIVWFGEEVPLLKEAVSLVKQVHLLIIIGTSLQVYPAASLYTHA-NKDALIYYIDPKAKNARLPQNVQCINENAVHAMQDLMPKLIEMASQEMLK
1S5P Chain:A ((1-233))
KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ-VLDWTGDVTPEDKC----PLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQ----EFAEKYYGPASQVVPEFVEKLLKGLK-----
General information:
TITO was launched using:
RESULT:
Template:
1S5P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118466 for 1791 contacts (-66.1/contact) +
2D Compatibility (PS) -23183 + (NN) -5251 + (LL) 1256
1D Compatibility (HY) -14400 + (ID) 4450
Total energy: -164494.0 ( -91.84 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1S5P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S5P-query.scw
PDB file :
Tito_Scwrl_1S5P.pdb
: