Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRNVTAKKKVVKKNIARGVVYISATFNNTNITITDEMGNVICWSTAGGLGFKGSK-KSTPYAAQQAVESALSKAKEHGVKEVGIKVQGPGS--------GRETAIKSVGATEGVKVLWIKDITPLPHNGCRPPKRRRV
4CW7 Chain:D ((13-128))
-----------------KWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRAL-ARAGLKIGRVEDVTPIPHDGTRPKGGR--
General information:
TITO was launched using:
RESULT:
Template:
4CW7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33352 for 827 contacts (-40.3/contact) +
2D Compatibility (PS) -12014 + (NN) -9112 + (LL) 1404
1D Compatibility (HY) -3600 + (ID) 2050
Total energy: -58724.0 ( -71.01 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_4CW7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CW7-query.scw
PDB file :
Tito_Scwrl_4CW7.pdb
: