Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
2YPI Chain:B ((29-244))
-------------------------ASIP-----ENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLE--EVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE-FVDIIN-------
General information:
TITO was launched using:
RESULT:
Template:
2YPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100377 for 1721 contacts (-58.3/contact) +
2D Compatibility (PS) -22962 + (NN) -9382 + (LL) 2724
1D Compatibility (HY) -16800 + (ID) 3700
Total energy: -150497.0 ( -87.45 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2YPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YPI-query.scw
PDB file :
Tito_Scwrl_2YPI.pdb
: