Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3JWF Chain:B ((9-166))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
3JWF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92948 for 1150 contacts (-80.8/contact) +
2D Compatibility (PS) -16960 + (NN) -5179 + (LL) 128
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -137059.0 ( -119.18 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_3JWF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JWF-query.scw
PDB file :
Tito_Scwrl_3JWF.pdb
: