Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKRGLLLVSVLMLFIFLTVACGSSEDNEESGEISTKEIELTVDDPIIPTDENGEATIEGTVDPKSKLTIDGKAVKKDDSGRFTYTYSLTNDNVAEVDVKLLAVRKNYKDEKYTITITNNSKAYNDNMVKQEAIQKEEAEKAEKERKEAEEKAKQEEEAAAAKAATTDENTPSDDTVYGTLASKDTLTKEGDAFYKDEALDVLYSTVENDEIFQVLIQLGDESTIRKDLDKNHLTELARDYMESDATLIQTVSDESFVYESPSINKTYTVDYMLNDEGYVIAVYVTQAK |
2JGO Chain:A ((4-29)) | -----------------------------------------------------------------------------------------------------------------------------------------EWEALEKKCAALESKLQALEKKLEALEHG--------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JGO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5349 for 94 contacts (56.9/contact) +
2D Compatibility (PS) -3300 + (NN) -3818 + (LL) 16600
1D Compatibility (HY) 0 + (ID) 250
Total energy: 14581.0 ( 155.12 by residue)
QMean score : 1.149
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