Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVATAPR----------------VAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRD---AHVRAGDYVVVVGL-GAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITT-----------------DVGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
| 3KRT Chain:A ((31-420)) | YRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNY-NSVHTSIFEPLSTFGFLE-RYGRV-S---DLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKS-NQ--LMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGAN-PICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE-TFGASVFVTRKGGTITTCASTSGYMHEYDN-RYLWMSLKRIIGSHFAN-----------YREAWEANRLIAKGRIH--PTLSKVYSLEDTGQAAYD-VHRNL-HQGKVGVL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KRT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151022 for 2818 contacts (-53.6/contact) +
2D Compatibility (PS) -34573 + (NN) -7088 + (LL) 768
1D Compatibility (HY) -6000 + (ID) 3500
Total energy: -201415.0 ( -71.47 by residue)
QMean score : 0.459
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