Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVKDFMTKKLVYVSPDTTVAEAADLLREHHLRRLPVVE-NDQLLGLVTEGTMAEAQPSKATSLSIYEMNYLLNKTKIRDIMIKDIVTVSQYASLEDAIYLMMSRKIGVLPVVD-NGQLYGIITDRDVFKAFLEIAGYGQEGYRLVILADEGIGVLSKVLNRLSSANLSVKRLVIIERKAGKKAVEIQLEGYADKDVLKQELVFDDVIVETLEKTVKKPLS
1PVM Chain:A ((9-133))
MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109855 for 929 contacts (-118.3/contact) +
2D Compatibility (PS) -13484 + (NN) -5939 + (LL) 3176
1D Compatibility (HY) -7600 + (ID) 1600
Total energy: -135302.0 ( -145.64 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1PVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PVM-query.scw
PDB file :
Tito_Scwrl_1PVM.pdb
: