Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVLILGGAGYIGSHMVDQLITQGKEKVIVVDNLVTGHR---QAVHS----DAIFYEGDLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDIKNIVFSSTAATYGIPEQVPILETAPQ-NPINPYGESKLMMETIMKWADQA-YGIKFVALRYFNVAGDKPDGSIGEDHK-PETHLLPIILQVAQGVRDKIMIFGDDYNTPDGTNVRDYVHPFDLADAHILAVDYLRQGNESNVFNLGSSTGFSNLQMLEAARRITGKEIPAQKAARRPGDPDTLIASSEKARQILGWEPKFDNIDKIISSAWAWHSSHPNGYED |
| 1UDB Chain:A ((1-338)) | MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH-AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR-TLDEMAQDTWHWQSRHPQGYPD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178245 for 2930 contacts (-60.8/contact) +
2D Compatibility (PS) -36029 + (NN) -21255 + (LL) -152
1D Compatibility (HY) -27600 + (ID) 6700
Total energy: -269981.0 ( -92.14 by residue)
QMean score : 0.572
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