Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNKNKIERQKRIKRLIQSGQIGTQEEIKLHLKNEGIDVTQATLSRDLREIGLLKLRSPEGK-LYYSLSTATSN-------RFSPALRSYILKVSRASFMLVLNTNLGEASVLANFIDEKGLPEILGTMAGADTLLVICQNEDIAKVFEKELSVGL
3LAP Chain:A ((16-168))
---ANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPE----GVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
General information:
TITO was launched using:
RESULT:
Template:
3LAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68909 for 970 contacts (-71.0/contact) +
2D Compatibility (PS) -15294 + (NN) -8737 + (LL) 136
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -104954.0 ( -108.20 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3LAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAP-query.scw
PDB file :
Tito_Scwrl_3LAP.pdb
: