Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIICKTPRELGIMREAGRIVALTHEELKKHIKPGISTKELDQIAERFIKKQGAIPSFKGYNGFRGSICVSVNEELVHGIPGSRVLKDGDIISIDIGAKLNGYHGDSAWTYPVGNISDDDKKLLEVTEESLYKGLQEAKPGERLSNISHAIQTYVENEQFSVVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNWTVVTVDGKKCAHFEHTIAITETGFDILTRV
3PKD Chain:A ((42-283))
----QTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT--
General information:
TITO was launched using:
RESULT:
Template:
3PKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95798 for 2150 contacts (-44.6/contact) +
2D Compatibility (PS) -26621 + (NN) -13494 + (LL) 964
1D Compatibility (HY) -18000 + (ID) 5150
Total energy: -158099.0 ( -73.53 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_3PKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PKD-query.scw
PDB file :
Tito_Scwrl_3PKD.pdb
: