Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQMNRYDQAATLRAKMEKRERVLPMVYSQKAKTLAVISGKGGVGKSNITLNMALALQDKGKKVLLIDLD-------IGMGNIDILIGNSSSATIIDVLTDRKPLLQSLSVGPKGLRYISGGTGLDVM-FQLDQRKWTFFANELSHALSQFDYVLFDMGAGLSKDQLPFILSAEDILIITTPEPTAIMDAYSAVKHLVLTENKLSMKVAVNRCRDQKEGLDAFARLSRTIHMFLDVQVQFAGSVSDDVIVSKAVVEQVPFFIKSPQAKASRSVRILADALFEREETRHKEDKQTFIEKLSSFLMRRA
3K9G Chain:A ((26-267))-----------------------------KPKIITIASIKGGVGKSTSAIILATLL-SKNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLFEIL--------KTKDRFLGTISEN------------------------------------------KDYIKEYENILEIFLKKI


General information:
TITO was launched using:
RESULT:

Template: 3K9G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1084 -154917 -142.91 -710.63
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -142.91
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.447

(partial model without unconserved sides chains):
PDB file : Tito_3K9G.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3K9G-query.scw
PDB file : Tito_Scwrl_3K9G.pdb: