Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTIMLTPMQTEEFRSYLTYTTKHYAEEKVKAGTWLPEDAQLLSKQVFTDLLPRGLETPHHHLWSLKLNEKDIVGWLWIHAE--PEHPQQEAFIYDFGLYEPYRGKGYAKQALAALDQAARSMGIRKLSLHVFAHNQTARKLYEQTGFQETDVVMSKKL
1VKC Chain:A ((10-158))------EYTIVDGEEYIEEIKKLDREISYSFVR--FPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNP-AVKWYEERGYKARALIMEKPI


General information:
TITO was launched using:
RESULT:

Template: 1VKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 546 -41137 -75.34 -279.84
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -75.34
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.525

(partial model without unconserved sides chains):
PDB file : Tito_1VKC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VKC-query.scw
PDB file : Tito_Scwrl_1VKC.pdb: