Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVVRSIGKKMQRISGPNALAVKGRPTQVYGHTHVRLDCRFMADSEFTAPEVTQLAEGLHRALSKLISMLRRGDPNGAAAGDLTLAQLSILVTLLDQGPIRMTDLAAHERVRTPTTTVAIRRLEKIGLVKRSRDPSDLRAVLVDITPQGRAVHGESLANRRAALAALLSQLPRSDLETLRKALAPLERLASGEPASGPASNSPARKRA
4XRF Chain:A ((7-140))
----------------------------------------------------------IQALAFSIGKKMQTELLEQMQATGLTPPQFYILKILDHYGASRATTLAKKMYVKPSAITVMIDRLIDQELVERYHDKDDRRVVIIELTKKGKARVEEAMTARNEHIAKYFSHLELQEREDLLRLFEKLETIICG----------------
General information:
TITO was launched using:
RESULT:
Template:
4XRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38402 for 861 contacts (-44.6/contact) +
2D Compatibility (PS) -14854 + (NN) -8759 + (LL) 4068
1D Compatibility (HY) -6400 + (ID) 1900
Total energy: -66247.0 ( -76.94 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4XRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XRF-query.scw
PDB file :
Tito_Scwrl_4XRF.pdb
: