Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGQKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDALMRIDLPASVDVNIQ
3R2D Chain:J ((5-81))
---EKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEFS---------------------RILDIIRFTPQTIEALMEISLPAGVDVEVK
General information:
TITO was launched using:
RESULT:
Template:
3R2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49267 for 518 contacts (-95.1/contact) +
2D Compatibility (PS) -8489 + (NN) -5162 + (LL) 1620
1D Compatibility (HY) -8000 + (ID) 2150
Total energy: -71448.0 ( -137.93 by residue)
QMean score : 0.754
(partial model without unconserved sides chains):
PDB file :
Tito_3R2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R2D-query.scw
PDB file :
Tito_Scwrl_3R2D.pdb
: