Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKPNNQTTVVITGASSGIGVELARGLAGRGFPLMLVA-RRRERLDELADQLRQEHCVGVEVLPLDLADTQARAQLADRL--RSDAIAGLCNSAGFGTSGRFWELPFARESEEVVLNALALMELTHAALPGMVKRGAGAVLNIASIAGFQPIPYMAVYSATKAFVLTFSEAVQEELHGTGVSVTALCPGPVPTEWAEIASAERFSIPLAQVSPHDVAEAAIAGMLSGKRTVVPGIVPKFVSTSGRFAPRSLLLPAIRIGNRLRGGPSR
2ZTV Chain:B ((8-204))
------------VVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRT---------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2ZTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127264 for 1456 contacts (-87.4/contact) +
2D Compatibility (PS) -19888 + (NN) -11755 + (LL) 5076
1D Compatibility (HY) -8000 + (ID) 2900
Total energy: -164731.0 ( -113.14 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTV-query.scw
PDB file :
Tito_Scwrl_2ZTV.pdb
: