Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRAKAAPVAGPEVAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR
2P5M Chain:A ((7-82))
---------------------------------------------------------------------------------------------LSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLEL-
General information:
TITO was launched using:
RESULT:
Template:
2P5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55762 for 556 contacts (-100.3/contact) +
2D Compatibility (PS) -8271 + (NN) -3812 + (LL) 6076
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -69319.0 ( -124.67 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_2P5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P5M-query.scw
PDB file :
Tito_Scwrl_2P5M.pdb
: