Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQVHRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPFAGRGVIGLPGSPFGERRPSDYHLELAGPGRVW-YQDYFAVQDGIITEIEEDLRGWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPETMPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYDVGTIWGAQAIERAHEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDFLGGLRP |
| 5ALF Chain:A ((259-543)) | --------------------------GPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF-------IPAN------PNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSL-FRASDESVLSMHKVCEAGGLFVNSPEEPSLSRM------------------------VTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLV--PQMSQHMEDWIPHLKRGH-IEDCGHWTQMDKPTEVNQILIKWL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5ALF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195415 for 2391 contacts (-81.7/contact) +
2D Compatibility (PS) -29283 + (NN) -3226 + (LL) 3420
1D Compatibility (HY) -24400 + (ID) 5250
Total energy: -254154.0 ( -106.30 by residue)
QMean score : 0.400
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