Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPAPSPDARAVVTGASQNIGAALATELAARGHHLIVTARREDVLTELAARLADKYRVTVDVRPADLADPQERSKLADELAAR--PISILCANAGTATFGPIASLDLAGEK--TQVQLNAVAVHDLTLAVLP--GMIERKAGGILISGSAAGNSPIPYNATYAATKAFVNTFSESLRGELRGSGVHVTVLAPGPVRTELPDASEASLVEKLVPDFLWISTEH-----TARVSLNALERNKMRVVPGLTSKAMSVASQYAPRAIVAPIVGAFYKRLGGS
3RI3 Chain:B ((29-241))
-----------ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR--LGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM-----AASVREH--------TEEAFDRITARV-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RI3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113403 for 1546 contacts (-73.4/contact) +
2D Compatibility (PS) -21116 + (NN) -11306 + (LL) 4316
1D Compatibility (HY) -10800 + (ID) 3500
Total energy: -155809.0 ( -100.78 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_3RI3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RI3-query.scw
PDB file :
Tito_Scwrl_3RI3.pdb
: