Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVVLSVGSNLGDRLARLRSVADGLGD----ALIAASPIYEADPWGGVEQGQFLNAVLIADDPTCEPREWLRRAQEFER-AAGRVRGQRWGPRNLDVDLIACYQTSATEALVE-----VTARENHLTLPHPLAHLRAFVLIPWIAVD-PTAQLTVAGCPRPVTRLLAELEPADRDSVRLFRPSFDLNSRHPVSRAPES
2BMB Chain:A ((18-185))
WKRAFLAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFMNGCVEVE-TLLTPSELLKLCKKIEYEELQ---------RTIDLDIVMF---------LNSAGEDIIVNEPDLNIPHPRMLERTFVLEPLCELISPVHLHP--VTAEPIVDHLKQLYDK--------------------------
General information:
TITO was launched using:
RESULT:
Template:
2BMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111232 for 1052 contacts (-105.7/contact) +
2D Compatibility (PS) -15337 + (NN) -6249 + (LL) 2324
1D Compatibility (HY) -10800 + (ID) 1900
Total energy: -143194.0 ( -136.12 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_2BMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMB-query.scw
PDB file :
Tito_Scwrl_2BMB.pdb
: