Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIM-DGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
1JP3 Chain:A ((13-240))
-----LPAHGCRHVAII-MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSM--------------ELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------------------
General information:
TITO was launched using:
RESULT:
Template:
1JP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127034 for 1634 contacts (-77.7/contact) +
2D Compatibility (PS) -23830 + (NN) -17203 + (LL) 3008
1D Compatibility (HY) -19200 + (ID) 5650
Total energy: -189909.0 ( -116.22 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_1JP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JP3-query.scw
PDB file :
Tito_Scwrl_1JP3.pdb
: