Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKEKFERNKPHVNVGTIGHVDHGKTTLTAAL--------------TKVCSDTWGGSARAFD-QIDNAPEEKARGITINTSHVEYDSAVRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKADMV----DDAELLELVEMEVRDLLNTYDFPGDDTPIIIGSALMALEGKDDNGIGVSAVQKLVE--TLDSYIPE---PVRAIDQPFLMPIEDVFSISGRGTVVTGRVERGIIKVQEEVEIVGIKATTKTTCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHT---KFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNCELPEGVEMVMP---------------GDNIKMVVTLIAPIAMEDGL------RFAIREGGRTVGAGVVAKIIE |
| 1SKQ Chain:A ((4-427)) | ---------KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE-----------MRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVD-QVSKFMRSYGFNTNKVRFV---PVVAPSG--DNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGD--KIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN--PPTVADEFTARIIVV-----WHPTALANGYTPVLHVHTASVA--CRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196579 for 2767 contacts (-71.0/contact) +
2D Compatibility (PS) -38714 + (NN) -13154 + (LL) 2316
1D Compatibility (HY) -27600 + (ID) 6650
Total energy: -280381.0 ( -101.33 by residue)
QMean score : 0.529
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