Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKDCIESTGDYFLLCDAEGPWGIILESLAILGIVVTILLLLAFLFLMRKIQDCSQWNVLPTQLLFLLSVLGLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVRGCVSFSWTTILCIAIGCSLLQIIIATEYVTLIMTRGMMFVNMTPCQLNVDFVVLLVYVLFLMALTFFVSKATFCGPCENWKQHGRLIFITVLFSIIIWVVWISMLL---RGNPQFQRQPQWDDPVVCIALVTNAWVFLLLYIVPELCILYRSCRQECPLQGNACPVTAYQHSFQVENQELSRARDSDGAEEDVALTSYGTPIQPQTVDPTQECFIPQAKLSPQQDAGGV- |
4Q2E Chain:A ((29-290)) | ITASVVAPFVVLCFV-----------SYESLIGLVSAILILAGYELITLEMKE-------RDARFFYVILLALYPVLYGLVFEEP-----------------------------------------------------------TQPLSILFITGVVFSLITDKDPSQVFKTVAAFSIALIYVTFFLSF--FLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGRTRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVICFRTFLPFAATVAIMDTFGDIFECALKRHYGVKDSGK-------TLPGHGGMLDRIDGLLFV-APVSYIVFKILEGVVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q2E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230526 for 2100 contacts (-109.8/contact) +
2D Compatibility (PS) -26090 + (NN) -6363 + (LL) 8136
1D Compatibility (HY) -20400 + (ID) 1900
Total energy: -277143.0 ( -131.97 by residue)
QMean score : 0.075
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