Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRQNQSCVVEFILLGFSNFPELQVQLFGVFLVIYVVTLMGNAIITVIISLNQSLHVPMYLFLLNLSVVEVSFSAVITPEMLVVLSTEKTMISFVGCFAQMYFILLFGGTECFLLGAMAYDRFAAICHPLNYPVIMNRGVFMKLVIFSWISGIMVA-TVQTTW---------VFSFPFCGPNEINHLFCETPPVLELVCADTFLFEIYAFTGTILIVMVPFLLILLSYIRVLFAILK-------MPSTTGR--QKAFSTCASHLTSVTLF-------YGTANMTYLQPKSGYSPETKKLISLAYTLLTPLLNPLIYSLRNSEMKRTLIKLWRRKVILHTF |
| 2YDO Chain:A ((12-308)) | -----------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP-FAIAISTGFCAACH-GCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMV-----YFNFFA------CVLVPLLLMLGVYLRIFLAARRQLKQMES-------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235235 for 2009 contacts (-117.1/contact) +
2D Compatibility (PS) -26666 + (NN) -12773 + (LL) 3548
1D Compatibility (HY) -22400 + (ID) 3350
Total energy: -296876.0 ( -147.77 by residue)
QMean score : 0.319
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