Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSPSNATVPCGFLLQGFSEFPHLRPVLFLLLLGVHLATLGGNLLILVAVASMPSRQPML-LFLCQLSAIELCYTLVVVPRSLVDLSTPGHRRGSPISFLSCAFQMQMFVALGGAECFLLAAMAYDRYVAICHPLRYAAVVTPGLCARLALACCLRGLAVSVGLTVAI-------FHLPFCGSRLLLHFFCDITALLHLACTRSYADELPLLGACLVLLLLPSVLILASYGAI-AAALRRLR------CPKGRGKAASTCALHLAVTF-------------LH-YGCATFMYVRPRASYSPRLDRTLALVYTNVTPLLCPLIYSLRNREITAAL-----SRVLGRRRPGQAPGGDLREL |
| 3VGA Chain:A ((23-308)) | -----------------------------------------GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA-ITIST-----GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVT-GTRAKGIIAICWV-LSFAIGLTPMLGWNNCGQ--SQGCGEGQVACLFEDVVPMNYMVYFNFFA-----------CVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC--PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208133 for 1707 contacts (-121.9/contact) +
2D Compatibility (PS) -25790 + (NN) -13625 + (LL) 3596
1D Compatibility (HY) -25600 + (ID) 3900
Total energy: -273452.0 ( -160.19 by residue)
QMean score : 0.262
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