Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFFIIHSLVTSVFLTALGPQNRTMHFVTEFVLLGFHGQREMQSCFFSFILVLYLLTLLGNGAIVCAVKLDRRLHTPMYILLGNFAFLEIWYISSTVPNMLVNILSEIKTISFS--------GCFLQFYFFFSLGTTECFFLSVMAYDRYLAICRPLHYPSIMTGKFCIILVCVCWVGGFLCYPVPIVLISQLPFCGPNIIDHLVCDPGPLFALACISAPSTELICYTFNSMIIFGPFLSILGSYTLVIRAVLC--IPSGAGRT---KAFSTCGSHLMVVSLFYGTLMVMYV-------SPTSGNPAGMQKIITLVYTAMTPFLNPLIYSLRNKDMKDALKRVLGLTVSQN |
| 4UG2 Chain:A ((7-303)) | ------------------------------------------SVYITVELAIAVLAILGNVLVCWAVWLNSNLQN-----VTNY-----FVVSAAAADILVGVLAIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV-PLLLMLGVYLRIFLAARRQL-----ARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4UG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -264610 for 2047 contacts (-129.3/contact) +
2D Compatibility (PS) -26201 + (NN) -5034 + (LL) 4896
1D Compatibility (HY) -27200 + (ID) 3150
Total energy: -321299.0 ( -156.96 by residue)
QMean score : 0.261
|
|
|