Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGLTQDFFPPTSELLEGGNQTSTFEFLLWGLSDQPQQQHIFFLLFLWMYVVTVAGNLLIVLAIGTDTHLHTPMYFFLASLSCADIFSTSTTVPKALVNIQTQSRSISYAGCLAQLYFFLTFGDMDIFLPATMAYDRYVAICHLLHYMMIMSLHRCAFLVTACWTLTSLLAMTRTFLIFRLSLCSAILPGFFCDLGPLMKVSCSDAQVNEL---------VLLFLGGAVILIPFMLILVSYIRIVSAILRA------PSAQGR--RKAFSTCDSHLVVVALFFGTVIR-------AYLCPSSSSSNSVKEDTAAAVMYTVVTPLLNPFIYSMRNKDMKAAVVRLLKGRVSFSQGQ |
| 2YDO Chain:A ((18-311)) | -------------------------------------------------VLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA-IAISTGFCAACH-GCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM-----LGWNNCGQP----KEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT--NSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195900 for 1949 contacts (-100.5/contact) +
2D Compatibility (PS) -26768 + (NN) -5493 + (LL) 5012
1D Compatibility (HY) -21600 + (ID) 3550
Total energy: -248299.0 ( -127.40 by residue)
QMean score : 0.268
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