Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFPSHDSQAFTSVDMEVGNCTILTEFILLGFSADSQWQPILFGVFLMLYLITLSGNMTLVILIRTDSHLHTPMYFFIGNLSFLDFWYTSVYTPKILASCVSEDKRISLAGCGAQLFFSC---VVAYTECYLLAAMAYDRHAAICNPLLYSGTMSTALCTGLVAGSY-----IG-----GFLNAIAHTANTFRLHFCGKNIIDHFFCDAPPLVKMSCTNTRVYEKVLLGVVGFTVLSSILAILISYVNILLAILRI------HSASGRHKAFSTCASHLISVMLFYGSLL-------FMYSRPSSTYSLERDKVAALFYTVINPLLNPLIYSLRNKDIKEAFRKATQTIQPQT |
| 2YDO Chain:A ((12-305)) | --------------------------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGC---LFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPM------NYMVYFNFFA-----CVLVPLLLMLGVYLRIFLAARRQLKQMES----TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201442 for 1954 contacts (-103.1/contact) +
2D Compatibility (PS) -26937 + (NN) -11949 + (LL) 3972
1D Compatibility (HY) -18000 + (ID) 3500
Total energy: -257856.0 ( -131.96 by residue)
QMean score : 0.360
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