Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----APLPPCNMIVNQ---LNPCVPFLTRNMATPS------------QMCCNGVRYLANYSSSKADRISICQCIEGSRSMFPLVDFSLISDLPASCRVPITLPKITPTFDCSTA
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD----------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ-PCQM-
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48588 for 565 contacts (-86.0/contact) +
2D Compatibility (PS) -8226 + (NN) 1259 + (LL) 640
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -58415.0 ( -103.39 by residue)
QMean score : 0.121
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: