Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLYDMQKNYAPLLANLGLIYMKKENYKGAKEYMVTVISLDQNNIFYIYNLAVILDKLSDFKNAAIFYLKLLNMAANLKDVSKKIPICKVEARLKFIKLHSTD
1W3B Chain:A ((159-235))
-LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR
General information:
TITO was launched using:
RESULT:
Template:
1W3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54873 for 563 contacts (-97.5/contact) +
2D Compatibility (PS) -8168 + (NN) -5894 + (LL) 208
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -73377.0 ( -130.33 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1W3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W3B-query.scw
PDB file :
Tito_Scwrl_1W3B.pdb
: