Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHP-------NNPHKGYVGHHLFIK-LGNYHQTIFPEAYVPFLQKY-NPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLL---RVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
3ERV Chain:A ((32-228))
--VILSNVPFIQQ-LPE-LDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESG---YGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEHCVVLIGYDQESVYIRDPL---KDSL------------DVKVPREKFEQAWVQMGSQAISYVKRSK-----------
General information:
TITO was launched using:
RESULT:
Template:
3ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136262 for 1505 contacts (-90.5/contact) +
2D Compatibility (PS) -20677 + (NN) -11368 + (LL) 2132
1D Compatibility (HY) -8000 + (ID) 2700
Total energy: -176875.0 ( -117.52 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_3ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERV-query.scw
PDB file :
Tito_Scwrl_3ERV.pdb
: