Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYENDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFEG----VFFAIGAHPYDVESFD---EGLFEKFVSHQKCVAIGECGLDYYRLPELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNLLKSYPKAF--GVLHCFNAD--SMLLELSDRFYYGI-GGVSTFKNAKRLVEILPKIPKNRLLLETDSPYLTPHPFR----GTRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
3RCM Chain:A ((3-240))
-LIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRAVGECGLDFNR--DFSPR----PLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEVLREVALHRGESAEHTAAHTTATARDFFQLP
General information:
TITO was launched using:
RESULT:
Template:
3RCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134963 for 1892 contacts (-71.3/contact) +
2D Compatibility (PS) -23922 + (NN) -15470 + (LL) 424
1D Compatibility (HY) -18400 + (ID) 3350
Total energy: -195681.0 ( -103.43 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3RCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RCM-query.scw
PDB file :
Tito_Scwrl_3RCM.pdb
: